PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02791.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 371aa    MW: 40122.3 Da    PI: 6.7294
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02791.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.65.5e-23252315164
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                              eke+kre+rkq+NRe+ArrsR+RK+ae+eeL  kv++L aeN++L+++l +l++e++kl+ e+e
  Rsa1.0_02791.1_g00001.1 252 EKEVKREKRKQSNRESARRSRLRKQAETEELSVKVDALVAENMTLRSKLGQLNDESEKLRLENE 315
                              89*********************************************************99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.2E-251101IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.0E-14136230No hitNo description
Gene3DG3DSA:1.20.5.1706.3E-15248311No hitNo description
PfamPF001709.0E-22252314IPR004827Basic-leucine zipper domain
SMARTSM003386.5E-20252316IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.76254317IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-10255311No hitNo description
CDDcd147022.59E-20257306No hitNo description
PROSITE patternPS000360259274IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGSNEEGKST QSDKPEQVQA PPPPPPPEQS NVHVYHHDWA AMQAYYGPRV AIPPQYYNSN  60
GHAPAPPPPY IWGSPSPMMA PYGTPYPPFC PPGGVYAHPA LQMGSQPQGP VSQATPVVTT  120
TPLNLEAPAN SPGNTDQGFM KKLKEFDGLA MSISNNKAGS AEHSSGPRNS QSSENDDSSN  180
GSDGNTTGGE QSRKKRSREG SPNNDGKPSS QIVPLLRDEN EKAAVTMGTP VMPTAMDFPQ  240
PCHGAPHEVW NEKEVKREKR KQSNRESARR SRLRKQAETE ELSVKVDALV AENMTLRSKL  300
GQLNDESEKL RLENEALLAQ LKATQTQATG KTENLISRVD NNNNNSVSGS SKNVEQQLLN  360
VSLRTDSVAA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268274RRSRLRK
2268275RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX921020.0X92102.1 R.sativus mRNA for G-box binding protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111420.10.0PREDICTED: G-box-binding factor 2
RefseqXP_013660548.10.0PREDICTED: G-box-binding factor 2 isoform X1
RefseqXP_013660549.10.0PREDICTED: G-box-binding factor 2 isoform X1
RefseqXP_013660550.10.0PREDICTED: G-box-binding factor 2 isoform X2
SwissprotP427751e-171GBF2_ARATH; G-box-binding factor 2
TrEMBLQ411660.0Q41166_RAPSA; G-Box binding protein (Fragment)
STRINGBra037382.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-124G-box binding factor 2